Skills for Codex CLI

OneKGPd

k-dense-ai

Query individual-level data from the 1000 Genomes Project.

LaminDB

k-dense-ai

Manage and track biological datasets with ease.

Neuropixels Analysis

k-dense-ai

Comprehensive analysis for Neuropixels recordings.

Scanpy

k-dense-ai

Comprehensive toolkit for single-cell RNA-seq analysis.

Dask

k-dense-ai

Scale your data processing beyond memory limits.

BIDS Dataset Management

k-dense-ai

Streamline your neuroscience data organization and validation.

deepTools

k-dense-ai

NGS analysis toolkit for high-throughput sequencing data.

Scikit-Survival

k-dense-ai

Model and evaluate survival data with precision.

Molecular Featurization Hub

k-dense-ai

Transform chemical structures into ML-ready features.

PyTDC

k-dense-ai

Access and evaluate therapeutic datasets with PyTDC.

PyDESeq2

k-dense-ai

Perform differential gene expression analysis with ease.

ETE Toolkit 4

k-dense-ai

Efficiently analyze and visualize phylogenetic trees.

PyMC Bayesian Modeling

k-dense-ai

Efficient Bayesian modeling and inference with PyMC.

Matchms

k-dense-ai

Process and compare tandem mass spectra efficiently.

Polars

k-dense-ai

High-performance DataFrame library for Python and Rust.

LiteParse

k-dense-ai

Local parsing of documents with bounding box support.

Histolab

k-dense-ai

Streamline whole slide image processing for pathology.

Genomic Coordinates

k-dense-ai

Convert and normalize genomic intervals with precision.

Arboreto

k-dense-ai

Infer gene regulatory networks from expression data efficiently.

scvi-tools

k-dense-ai

Advanced tools for single-cell omics analysis.

Vaex

k-dense-ai

Efficiently process and analyze massive datasets with ease.

Ontology Term Resolution

k-dense-ai

Accurately resolve and validate ontology terms.

Zarr Python

k-dense-ai

Efficiently store and manage large N-dimensional arrays.

U.S. Treasury Fiscal Data API

k-dense-ai

Access federal financial data without an API key.