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Bioinformatics skills

Free agent skills tagged bioinformatics, ready to install into any SKILL.md-compatible agent.

Nextflow Development

anthropics

Run nf-core bioinformatics pipelines with ease.

Research & EducationintermediatePython · Shell23.4k repo

Nextflow

k-dense-ai

Build and run reproducible data pipelines with ease.

Developer ToolsintermediatePython · Shell33.2k repo

BioServices

k-dense-ai

Access 40+ bioinformatics services with a unified API.

Developer ToolsintermediatePython · Shell33.2k repo

Scanpy

k-dense-ai

Comprehensive toolkit for single-cell RNA-seq analysis.

Data & AnalyticsintermediatePython · Shell33.2k repo

Polars Bio

k-dense-ai

High-performance genomic interval operations for bioinformatics.

Developer ToolsintermediatePython · Shell33.2k repo
P

Pacsomatic Toolkit

k-dense-ai

Streamline tumor-normal workflows with ease.

Developer ToolsintermediatePython · Shell33.2k repo

Genomic Coordinates

k-dense-ai

Convert and normalize genomic intervals with precision.

Data & AnalyticsintermediatePython · Shell33.2k repo

Gtars

k-dense-ai

Manage genomic intervals with precision and efficiency.

Developer ToolsintermediatePython · Shell33.2k repo

gget

k-dense-ai

Streamline bioinformatics queries with a unified command-line tool.

Research & EducationintermediatePython · Shell33.2k repo

PyDESeq2

k-dense-ai

Perform differential gene expression analysis with ease.

Data & AnalyticsintermediatePython · Shell33.2k repo

Tamarind Bio

k-dense-ai

Run molecular design tools in the cloud without local resources.

Developer ToolsintermediatePython · Shell33.2k repo

Pathway Enrichment

k-dense-ai

Analyze and interpret gene-set enrichment results.

Data & AnalyticsintermediatePython · Shell33.2k repo

Bulk RNA-seq

k-dense-ai

End-to-end orchestration for RNA-seq analysis.

Research & EducationintermediatePython · Shell33.2k repo

Arboreto

k-dense-ai

Infer gene regulatory networks from expression data efficiently.

Data & AnalyticsintermediatePython · Shell33.2k repo

LatchBio Integration

k-dense-ai

Streamline bioinformatics workflows with Latch.

Developer ToolsintermediatePython · Shell33.2k repo

ETE Toolkit 4

k-dense-ai

Efficiently analyze and visualize phylogenetic trees.

Data & AnalyticsintermediatePython · Shell33.2k repo

deepTools

k-dense-ai

NGS analysis toolkit for high-throughput sequencing data.

Data & AnalyticsintermediatePython · Shell33.2k repo

Evolutionary Scale Modeling

k-dense-ai

Generate and design proteins using advanced models.

Developer ToolsintermediatePython · Shell33.2k repo

Pysam

k-dense-ai

Efficient access to genomic data formats with Python.

Developer ToolsintermediatePython · Shell33.2k repo

OneKGPd

k-dense-ai

Query individual-level data from the 1000 Genomes Project.

Data & AnalyticsintermediatePython · Shell33.2k repo

Adaptyv Bio Foundry API

k-dense-ai

Streamline protein experiment design and results retrieval.

Developer ToolsintermediatePython · Shell33.2k repo

COBRApy

k-dense-ai

Advanced metabolic modeling for systems biology.

Developer ToolsintermediatePython · Shell33.2k repo

Scikit-Bio

k-dense-ai

A toolkit for biological data analysis and visualization.

Data & AnalyticsintermediatePython · Shell33.2k repo

Glycoengineering

k-dense-ai

Optimize glycosylation for therapeutic proteins and vaccines.

Developer ToolsintermediatePython · Shell33.2k repo