
Data Structure Protocol
FreeEnhance codebase navigation with persistent structural memory.
Free · Opens the source repo
What Data Structure Protocol does
The Data Structure Protocol (DSP) provides a solution for coding agents that struggle with context loss in large codebases. Traditional approaches often require agents to spend significant computational resources on understanding the layout and dependencies of the code, which can lead to inefficiencies. DSP addresses this issue by creating a persistent, queryable graph representation of the codebase, stored in a .dsp/ directory. This allows agents to navigate dependencies, track public APIs, and understand the rationale behind connections without needing to re-read the entire repository.
Unlike conventional documentation, DSP focuses on capturing the essence of the codebase by detailing the meaning, boundaries, and reasons for each entity's existence. This structured approach enables agents to refactor and generate code more effectively, as they can rely on a clear understanding of the project's architecture. Each entity within the codebase is assigned a unique identifier (UID), ensuring stability across changes, while the reasons for dependencies provide crucial context that informs safe modification practices.
Setting up DSP is straightforward, requiring the installation of a Python CLI script that facilitates the initial mapping of the project structure. Once established, the protocol supports various commands for creating, updating, and navigating the entity graph, making it easier for developers to maintain an accurate representation of their codebase as it evolves. This skill is particularly beneficial for teams working on complex projects where understanding interdependencies is critical for successful development and maintenance.
When to use it
Use this skill when working with a project that has a `.dsp/` directory or when you need to set up DSP for a new project. It's ideal for tasks involving code modification, navigation, and impact analysis.
When not to use it
DSP may not be suitable for small projects where the overhead of maintaining a structural map outweighs the benefits. It's also not designed for human-readable documentation or when only minor internal changes are made.
What you can build with it
Navigating Complex Codebases
Use DSP to quickly understand the structure and dependencies of a large codebase, making it easier to find specific modules.
Impact Analysis Before Refactoring
Before making significant changes, leverage DSP to analyze how modifications will affect various parts of the codebase.
Maintaining Project Structure
As new files and modules are added, use DSP commands to keep the structural map updated, ensuring accurate representation of the codebase.
How to install Data Structure Protocol
View source1. Install with the skills CLI
npx skills add sickn33/agentic-awesome-skills/data-structure-protocol --agent claude-code2. Or install it manually
Download the skill folder and drop it into ~/.claude/skills/ for all projects, or .claude/skills/ to scope it to one repo. Restart Claude Code so it picks up the new skill.
Anthropic's agentic coding CLI, and the reference implementation of Agent Skills. Drop a skill folder into ~/.claude/skills and Claude Code loads it automatically whenever a task matches the skill's description. Claude Code docs
Inside SKILL.md
Written by sickn33Data Structure Protocol (DSP)
LLM coding agents lose context between tasks. On large codebases they spend most of their tokens on "orientation" — figuring out where things live, what depends on what, and what is safe to change. DSP solves this by externalizing the project's structural map into a persistent, queryable graph stored in a .dsp/ directory next to the code.
DSP is NOT documentation for humans and NOT an AST dump. It captures three things: meaning (why an entity exists), boundaries (what it imports and exposes), and reasons (why each connection exists). This is enough for an agent to navigate, refactor, and generate code without loading the entire source tree into the context window.
When to Use
Use this skill when:
- The project has a
.dsp/directory (DSP is already set up) - The user asks to set up DSP, bootstrap, or map a project's structure
- Creating, modifying, or deleting code files in a DSP-tracked project (to keep the graph updated)
- Navigating project structure, understanding dependencies, or finding specific modules
- The user mentions DSP, dsp-cli,
.dsp, or structure mapping - Performing impact analysis before a refactor or dependency replacement
Core Concepts
Code = graph
DSP models the codebase as a directed graph. Nodes are entities, edges are imports and shared/exports.
Two entity kinds exist:
- Object: any "thing" that isn't a function (module/file/class/config/resource/external dependency)
- Function: an exported function/method/handler/pipeline
Identity by UID, not by file path
Every entity gets a stable UID: obj-<8hex> for objects, func-<8hex> for functions. File paths are attributes that can change; UIDs survive renames, moves, and reformatting.
For entities inside a file, the UID is anchored with a comment marker in source code:
// @dsp func-7f3a9c12
export function calculateTotal(items) { ... }
# @dsp obj-e5f6g7h8
class UserService:
Every connection has a "why"
When an import is recorded, DSP stores a short reason explaining why that dependency exists. This lives in the exports/ reverse index of the imported entity. A dependency graph without reasons tells you what imports what; reasons tell you what is safe to change and who will break.
Storage format
Each entity gets a small directory under .dsp/:
.dsp/
├── TOC # ordered list of all entity UIDs from root
├── obj-a1b2c3d4/
│ ├── description # source path, kind, purpose (1-3 sentences)
│ ├── imports # UIDs this entity depends on (one per line)
│ ├── shared # UIDs of public API / exported entities
│ └── exports/ # reverse index: who imports this and why
│ ├── <importer_uid> # file content = "why" text
│ └── <shared_uid>/
│ ├── description # what is exported
│ └── <importer_uid> # why this specific export is imported
└── func-7f3a9c12/
├── description
├── imports
└── exports/
Everything is plain text. Diffable. Reviewable. No database needed.
Full import coverage
Every file or artifact that is imported anywhere must be represented in .dsp as an Object — code, images, styles, configs, JSON, wasm, everything. External dependencies (npm packages, stdlib, etc.) are recorded as kind: external but their internals are never analyzed.
How It Works
Initial Setup
The skill relies on a standalone Python CLI script dsp-cli.py. If it is missing from the project, download it:
curl -O https://raw.githubusercontent.com/k-kolomeitsev/data-structure-protocol/main/skills/data-structure-protocol/scripts/dsp-cli.py
Requires Python 3.10+. All commands use python dsp-cli.py --root <project-root> <command>.
Bootstrap (initial mapping)
If .dsp/ is empty, traverse the project from root entrypoint(s) via DFS on imports:
- Identify root entrypoints (
package.jsonmain, framework entry,main.py, etc.) - Document the root file:
create-object,create-functionfor each export,create-shared,add-importfor all dependencies - Take the first non-external import, document it fully, descend into its imports
- Backtrack when no unvisited local imports remain; continue until all reachable files are documented
- External dependencies:
create-object --kind external, add to TOC, but never descend intonode_modules/site-packages/etc.
Workflow Rules
- Before changing code: Find affected entities via
search,find-by-source, orread-toc. Read theirdescriptionandimportsto understand context. - When creating a file/module: Call
create-object. For each exported function —create-function(with--owner). Register exports viacreate-shared. - When adding an import: Call
add-importwith a briefwhy. For external deps — firstcreate-object --kind externalif the entity doesn't exist. - When removing import/export/file: Call
remove-import,remove-shared,remove-entity. Cascade cleanup is automatic. - When renaming/moving a file: Call
move-entity. UID does not change. - Don't touch DSP if only internal implementation changed without affecting purpose or dependencies.
Key Commands
| Category | Commands |
|---|---|
| Create | init, create-object, create-function, create-shared, add-import |
| Update | update-description, update-import-why, move-entity |
| Delete | remove-import, remove-shared, remove-entity |
| Navigate | get-entity, get-children --depth N, get-parents --depth N, get-path, get-recipients, read-toc |
| Search | search <query>, find-by-source <path> |
| Diagnostics | detect-cycles, get-orphans, get-stats |
When to Update DSP
| Code Change | DSP Action |
|---|---|
| New file/module | create-object + create-function + create-shared + add-import |
| New import added | add-import (+ create-object --kind external if new dep) |
| Import removed | remove-import |
| Export added | create-shared (+ create-function if new) |
| Export removed | remove-shared |
| File renamed/moved | move-entity |
| File deleted | remove-entity |
| Purpose changed | update-description |
| Internal-only change | No DSP update needed |
Examples
Example 1: Setting up DSP and documenting a module
python dsp-cli.py --root . init
python dsp-cli.py --root . create-object "src/app.ts" "Main application entrypoint"
# Output: obj-a1b2c3d4
python dsp-cli.py --root . create-function "src/app.ts#start" "Starts the HTTP server" --owner obj-a1b2c3d4
# Output: func-7f3a9c12
python dsp-cli.py --root . create-shared obj-a1b2c3d4 func-7f3a9c12
python dsp-cli.py --root . add-import obj-a1b2c3d4 obj-deadbeef "HTTP routing"
Example 2: Navigating the graph before making changes
python dsp-cli.py --root . search "authentication"
python dsp-cli.py --root . get-entity obj-a1b2c3d4
python dsp-cli.py --root . get-children obj-a1b2c3d4 --depth 2
python dsp-cli.py --root . get-recipients obj-a1b2c3d4
python dsp-cli.py --root . get-path obj-a1b2c3d4 func-7f3a9c12
Example 3: Impact analysis before replacing a library
python dsp-cli.py --root . find-by-source "lodash"
# Output: obj-11223344
python dsp-cli.py --root . get-recipients obj-11223344
# Shows every module that imports lodash and WHY — lets you systematically replace it
Best Practices
- ✅ Do: Update DSP immediately when creating new files, adding imports, or changing public APIs
- ✅ Do: Always add a meaningful
whyreason when recording an import — this is where most of DSP's value lives - ✅ Do: Use
kind: externalfor third-party libraries without analyzing their internals - ✅ Do: Keep descriptions minimal (1-3 sentences about purpose, not implementation)
- ✅ Do: Treat
.dsp/diffs like code diffs — review them, keep them accurate - ❌ Don't: Touch
.dsp/for internal-only changes that don't affect purpose or dependencies - ❌ Don't: Change an entity's UID on rename/move (use
move-entityinstead) - ❌ Don't: Create UIDs for every local variable or helper — only file-level Objects and public/shared entities
Integration
This skill connects naturally to:
- context-compression — DSP reduces the need for compression by providing targeted retrieval instead of loading everything
- context-optimization — DSP is a structural optimization: agents pull minimal "context bundles" instead of raw source
- architecture — DSP captures architectural boundaries (imports/exports) that feed system design decisions
References
- Full architecture specification: ARCHITECTURE.md
- CLI source + reference docs: skills/data-structure-protocol
- Introduction article: article.md
Limitations
- Use this skill only when the task clearly matches the scope described above.
- Do not treat the output as a substitute for environment-specific validation, testing, or expert review.
- Stop and ask for clarification if required inputs, permissions, safety boundaries, or success criteria are missing.
Frequently asked questions about Data Structure Protocol
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